NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335064_0000320

Scaffold Ga0335064_0000320


Overview

Basic Information
Taxon OID3300034357 Open in IMG/M
Scaffold IDGa0335064_0000320 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME12May2017-rr0187
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)28262
Total Scaffold Genes42 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (21.43%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001808Metagenome / Metatranscriptome631Y
F004451Metagenome / Metatranscriptome437N
F029102Metagenome / Metatranscriptome189N

Sequences

Protein IDFamilyRBSSequence
Ga0335064_0000320_1073_1522F004451N/AMKSTISADAVINNSFIYLCNIDIEVTDPGKVKAYLLNTIKMQILWSTSLTNRQERVTATDSTMPLVMDDDTDLYDKIREDIRYQDNMAVIETYRGRITDRIKLIVFQTYFDKGYSTARAMAEYFKIPVTSAHYWIQEIKTDLKNLRDEN
Ga0335064_0000320_19091_19252F029102N/AMKHSGVLSFLTFGFGYLSGISLVFADQIHFKLLGCLLISYFTFLLASEIESKE
Ga0335064_0000320_20171_20587F001808N/AMRYLAIIILLSSCSAQYHLNKAIKKGYTCEETGDTIRITTLDSIPVIIHDSIVWEKFITTKDTIIKYNTVYVPKTRQEKRIEYKLKIKTIYKDRIVEKAQAKATRPRTRGNLNLLFVGVGIGLLLSYLFKFAREKYLW
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