Scaffold Ga0335064

Basic Information
Taxon OID	3300034357 Open in IMG/M
Scaffold ID	Ga0335064_0000376 Open in IMG/M
Source Dataset Name	Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME12May2017-rr0187
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Basic Information

Taxon OID

3300034357 Open in IMG/M

Scaffold ID

Ga0335064_0000376 Open in IMG/M

Source Dataset Name

Freshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME12May2017-rr0187

Source Dataset Category

Metagenome

Source Dataset Use Policy

Open

Sequencing Center

DOE Joint Genome Institute (JGI)

Sequencing Status

Permanent Draft

Scaffold Components
Scaffold Length (bps)	26694
Total Scaffold Genes	32 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	13 (40.62%)
Novel Protein Genes	4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (25.00%)
Associated Families	4

Scaffold Components

Scaffold Length (bps)

26694

Total Scaffold Genes

32 (view)

Total Scaffold Genes with Ribosome Binding Sites (RBS)

13 (40.62%)

Novel Protein Genes

4 (view)

Novel Protein Genes with Ribosome Binding Sites (RBS)

1 (25.00%)

Associated Families

Taxonomy
Not Available	(Source: )

Taxonomy

Not Available

(Source: )

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Ecosystem

Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location Name	USA: Wisconsin
Coordinates	Lat. (^o)	43.0995	Long. (^o)	-89.4045	Alt. (m)	Depth (m)
Location on Map

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Source Dataset Sampling Location

Location Name

USA: Wisconsin

Coordinates

Lat. (^o)

43.0995

Long. (^o)

-89.4045

Alt. (m)

Depth (m)

Location on Map

Zoom:

Family	Category	Number of Sequences	3D Structure?
F014513	Metagenome	262	Y
F025268	Metagenome / Metatranscriptome	202	N
F048800	Metagenome / Metatranscriptome	147	Y
F101028	Metagenome	102	N

Family

Sequences

Protein ID	Family	RBS	Sequence
Ga0335064_0000376_17971_19965	F101028	GAG	MPTEGSVFDGFTSIIAQDADTHPSYLPESVVSESVNRTFRGGINRTRPSIRNINIVVGDGEAETIVNDILGGSFQGAYPYRATNYRTSDGILLSVSGIIYFLKIVNNRAFAYKIIEGNDPGMMHTFFVQAEDRAYIQNGYQNAIAWDGVLGTLTTSEIQNGDFCEIVSVGTTDFTLIGAPSNTVGVKFTATGSGVGTGTVKLPAYRLNPYLAKMPIGTVMEYAFGRVFVSDRFNQIYASDIIYGGGFTDTKNTENFTEIGYWAEGGAFSTPAMMGNITGMKVMPQIGTNLRGQGELVILTGNGAFSMDVSIPRSQWNTSNIQRISLLGRGCTSPYVGLANSELWFRSHDGWAFYSNSQSEFARYFSLRKLSREVNKWVENDTPWMKQFASTMFFDNYIISTVAPQTYRAEGVEGLNRYHRGMVVLDLDQSSSPAPDAQLSFRWNGIWTGFRPTQLLTALIQGEKRGFGFSFDKDNKNRLYEFTTSQGDDYGPNGNRQIDSFFTTGRYDFNRSGATNKFLRKKITGGEMWMSEIKGEVDSYVDFRADSNPCWSELKVPTTFGCNPCSPVVTECFPQRGGNRYKRYKFNTPDPSECNDLAGIPSVEGSEFQIKVNLTGAATVDRVRLMANIKNNDDSPIGDCPEENQECEPFLCCQEKYWEYNIVI
Ga0335064_0000376_19965_20468	F048800	N/A	MDNQSSSPALTFPNVPDDFCPTGNWQSVFQQFIDEVLTNGTILVPGLGDVTPQQIAQINESLATQQNEIDAIDTRVDALEPAVKVRYGTITVVAPSDSVRTVTFLTPLPTANYGISITPVCNSSIAAQPTPLFSLNVGSKLTTGFSIRIENNIAEITSVDWMAVHTS
Ga0335064_0000376_20674_21636	F014513	N/A	MADTLEEMVELVKGFVGDSGVCNYERAVKAVNQARRLLWNKRAWTSQEEYVQICCVNDCFTLPNRYEQIKLAWIGNESVSLADEWFNATNAYALHASKSCHRLITEVGGLHVLFRDYRTRPYQIAVLAENIEDVGVELMFDAQDEYQTYHKVKVTTAPSPNIGKSAEVVLGVRAVSKPITKGRIRVYAYDPVLEIKTLIAIYQPTDGNPTFRRFRVPKTCECITLYASKKYFDLTDPKELVEFIPDAMIYAILALNSRENRKAQEFLANLSLAVQEQEKEMSNAEIPTAAPIRFSNYSRADNLIGSDLLSPSPNDYFLSR
Ga0335064_0000376_2580_3992	F025268	N/A	MASEQLYFNSCAEIDSFFREGREYFNDLYVKKLVTNSAYFTRFEEQAWPLNHTTEQKAFRFGRGFHDPCTPFRAITDTYCETDSCDSKPEVIQRPGTESYTFELLRKEMTTDWICVESLLYRLFPAEEILQFEESNARITKNVHEEFLRSNYIGGAGHKWMGITTDDGTYCGLVDDQAWFVPEHTINNEAGYDLCAIRVKIDKDDLNKIAYLSLDMLDDALVDLQDEDDAFRLDLQDATGQPLLDIVIPDPQVGRALYFQAKRNNGYWDANTDFDERLTRLKLGINRIIGDYAFGYDINSARFNADTAFNAGLAAFNEADPATWARLVRVPRYIKTVIENGCAYIPNRAYRNADFGISVAMVNKAMCKWTMPSSSGYGEAQQMTQNYAGDWEWKNPDWECNRWRKSGFYQAQFRLAAQVKDPTIMHTFLHRMPKSKNLYGSCCEVQTYIVPENNQDCYSCAGVGDIVVPS

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

Scaffold Ga0335064_0000376

Overview

Ecosystem & Geography

Associated Families

Sequences