NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335064_0001281

Scaffold Ga0335064_0001281


Overview

Basic Information
Taxon OID3300034357 Open in IMG/M
Scaffold IDGa0335064_0001281 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME12May2017-rr0187
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13441
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (12.50%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021301Metagenome / Metatranscriptome219N
F031025Metagenome / Metatranscriptome183N
F104717Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0335064_0001281_4571_5131F021301N/AMNWKNITIHQLQEIHSCRDMSDLERQMNILAIALNLSMDEVESMTLDKLTNEFAKLSFLNDLPKAPIKFTFKLRGRYFRLAKTPNEMCGHHFIELQQVFNGDVIESLNKIVALLSVEVDFFGRNKKVVDAQAHYEDKCALMLHLPVPLPYTYALFFLEVYPELLKNILCSLTGQMKEMTEQLTNPQ
Ga0335064_0001281_5131_5331F104717N/AVWLEIVDKIVKGDRTKWDFILEMPLIEFLNSMAFYKAKTKERQKRLEDAAGKGFNPYIVACLNEML
Ga0335064_0001281_5812_6945F031025N/AVALSITQQPDSYHPAFNDTNFVITESSGGIYTKDNFKFIANVKVAATSVAKLKAPIYFGSTNKGVFNIGRIMESYVSNNWSFTDTSPSGCVDSFSDYEVEFGYEYSPSATGTITEYLDLTSATGTVWNAALNPFDLVTYAQAQYLATSSSAKFLTNVRTRSIHRTQKDWLYALKGDATSVVITYSDASTQTFTLPSSKVVRIPVGSQLTIPGGATFFDVVLKLGGTAKSETYRINIKDECSKYETTDIFFMNRLGGFDSFRFNMVRRDTFEVARKQFQSNPYSLGATYGYETSVRTRSNYHTTASQKVKLTSNWIDDTESVWLRDLIESPVVYMYDGTLYAVNIDNATYEQKKGVQDKMFNLELDVTLSFADKSQRL

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