NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335064_0005638

Scaffold Ga0335064_0005638


Overview

Basic Information
Taxon OID3300034357 Open in IMG/M
Scaffold IDGa0335064_0005638 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME12May2017-rr0187
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6345
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (26.67%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F028780Metagenome / Metatranscriptome190N
F040591Metagenome / Metatranscriptome161Y

Sequences

Protein IDFamilyRBSSequence
Ga0335064_0005638_1066_1599F028780AGGAMKATLDRYISSHYEELYRYTRYFCSKYNPKLTIDTVISNAYLHCIEINDNTEDVGKVKSYILNSIKRQVIWKNVDSYKDERILASEIAVPDTFDDGEDLNYKIAIEQQYQGWKSSVDIYRDGLTDNVKIAVAKAYFDKNFTTARSMAEYFNIPVTSAHYLITEIKNTLKTIHYENKG
Ga0335064_0005638_789_1082F040591N/AMKIKDEYKGMTLMKNTALGNITVVIDNIDVKRYDYYVSIGFGYLFEKETATAPIRYEGIEADEQTDAPVVTKPKRKRPVNAVAKKESKRNRNNDTAI
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