NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335064_0006541

Scaffold Ga0335064_0006541


Overview

Basic Information
Taxon OID3300034357 Open in IMG/M
Scaffold IDGa0335064_0006541 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME12May2017-rr0187
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5905
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F064651Metagenome / Metatranscriptome128N

Sequences

Protein IDFamilyRBSSequence
Ga0335064_0006541_2930_3571F064651AGGAGGVSTLRFANLHIRERFDRETVIWGIAPVIVAIMITALFVIPNYSRALRMQDEAQRLEAVSNENLNQKNNLQLLERNVAGLRDEYNRRCRPLAEGTDRDHLLSTITRPTDGTVVREQSIRTSALVQVDGVAIGSPVLRRDVTVDMSASFESIFGVLDAAEGVNQLVTPRSVEIVVMSTALEQAASGNFVVRATIVFEEWFEQPATANAPAQEARR
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