NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335064_0059183

Scaffold Ga0335064_0059183


Overview

Basic Information
Taxon OID3300034357 Open in IMG/M
Scaffold IDGa0335064_0059183 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME12May2017-rr0187
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2191
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → Terrabacteria group → Armatimonadetes → Armatimonadia → Capsulimonadales → Capsulimonadaceae → Capsulimonas → Capsulimonas corticalis(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F015339Metagenome255Y
F015469Metagenome / Metatranscriptome254N
F018175Metagenome236Y

Sequences

Protein IDFamilyRBSSequence
Ga0335064_0059183_1509_2189F015469N/AVVQNGNDVNVKLSSKFFDSNKFPAFNLESNYSPKSGWIRFAEFGGAAEYEWTPGTFKMIDDIDFNPNNWWIKETSKASLNKLMDAYSSNRSGAIIYRSTMNAISGKYEGEIFFRPSVERRDYPLNRTWQGLDRRVQFDLYVSKNRVVVVEDGYLVADSPLPVDFPFEEINVNYTHLIYHTWNEIGEQRTWNPDNAYWINFRPFADERHWDNMGFEVLTSFPNVKLF
Ga0335064_0059183_319_588F015339N/AMNTDPKILSEQYVRGRIWSFIRFNKYLRQIAHIFCEEFQYDKDDIIEVSLSDDGKTVWIHFDSGTIGFASELLWDKNVRETFKKNFEVD
Ga0335064_0059183_578_1435F018175N/AMDNLPKNQKEYYHNKVREFEKRTGKSMNVKGVSKIYDYNIENCEYNTPAAMDMMQKHGCYIYHDLLVEEDPRSNGTNWQMYGFAHVNGKTYKYYYETKQWGVEVKDFTHHQNKDKTWKAAKLDKTNFPYTLDPGEDYLPYAFENKHIGSGFDDFLKTNNIELKRDINWAVKMLNAGKMMTREGNPSLTLFPKKYDHAESTITTADLFAEDWVVVPNKLFKDVLDDLNAGKTIRRKSWHPDWGVGKYARYGKIIYLDLIADDWEVVDVVAEVNKQQEQILKDRNEH

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