NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335064_0075827

Scaffold Ga0335064_0075827


Overview

Basic Information
Taxon OID3300034357 Open in IMG/M
Scaffold IDGa0335064_0075827 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME12May2017-rr0187
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1964
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F024717Metagenome204Y
F052407Metagenome142Y
F104546Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0335064_0075827_1152_1964F104546N/AMNLLRTIIERLNQRIEVANIFDKQFGLCELNANGNDKAWVHYIGNGQAEVVTNFDAKNGTLFWAKRGKVTVNKTDAYKVSGCKQLYITSFPLTAYAIVRKSHLPCDSEDAQDWLASRIYKLASGTDPLFKQSIGVINYEVVPTGYINEIKTLTANYEWACVSVDVDVQVITSSEDGCYDTCATGDIPLPDLQPCTPCLTEVAVDGVTIIGNGTPADPLSAIGAGGGAIVVEDEGIEVTPVATTLNFTGEGVTASLTSPGVVEVNIVSASGT
Ga0335064_0075827_29_655F052407N/AMAVPVPILVFDMTTQKLVGTFNYQSEAVEEFIGRTYKANRRKLDLAFVYESLYDTTKMITKKGSCYDCGGGIRSVHICPFVDAIGIELTTDGTSVLTSKSKKYTQGMSMIYNVNCDRETWLCSIGGLMAMPLAYATAVEIYDYSLTIAPTIRVNTTVSVTNDTIVEARNIAATRYNEELAAMLQNMRLPDDSNCFDCRKNMKYVTALP
Ga0335064_0075827_655_1152F024717N/AMATVKEVNDRINALFSEWSGGFTPLFFAVQDMRRLMSIRIFGIGKSGGSNTAGQKLPSVPYTPAYALLKQKNGRPPLELTGFLKRSFSTDERSVFNEGFSSAIYIQADEAGKVKGLEEGVASGNPRYKTFQGYGPIFQPTDGEQAAMLQLHAELLVEQISQQISK
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