NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0335064_0298004

Scaffold Ga0335064_0298004


Overview

Basic Information
Taxon OID3300034357 Open in IMG/M
Scaffold IDGa0335064_0298004 Open in IMG/M
Source Dataset NameFreshwater microbial communities from Lake Mendota, Madison, Wisconsin, United States - TYMEFLIES-ME12May2017-rr0187
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1029
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Freshwater → Lake → Unclassified → Freshwater → Freshwater Microbial Communities From Lake Mendota, Crystal Bog Lake, And Trout Bog Lake In Wisconsin, United States

Source Dataset Sampling Location
Location NameUSA: Wisconsin
CoordinatesLat. (o)43.0995Long. (o)-89.4045Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037219Metagenome168Y
F053263Metagenome141Y

Sequences

Protein IDFamilyRBSSequence
Ga0335064_0298004_195_518F037219GGAGMTTQSKQWKDWEREVARDLGGTRTGPRGFDVPDVIDLPNGFSPECKYQKRLALKTEDLKQAEHNARGSEWALFLREGRTGRRFVVVPYKTYVKMWNLIHADKDDNNE
Ga0335064_0298004_511_861F053263AGGAMSEYVTVAGLVQFDPRTRQAGEKQVRDVVIRAIGSNKNFSITVWPDKDNIIINKGDFIVVDGKHSQSSGQNKAGEQVTYNNVSANTLIRITGEGSTDAPQATTTNASVSTGDDFPF
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