Scaffold Ga0326783_049317

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0326783_049317

Scaffold Ga0326783_049317

Overview

Basic Information
Taxon OID	3300034362 Open in IMG/M
Scaffold ID	Ga0326783_049317 Open in IMG/M
Source Dataset Name	Metatranscriptome of soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - S04 (Eukaryote Community Metatranscriptome)
Source Dataset Category	Metatranscriptome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	609
Total Scaffold Genes	1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
All Organisms → cellular organisms → Eukaryota → Amoebozoa → Tubulinea → Elardia → Arcellinida → Sphaerothecina → Arcellidae → Arcella → Arcella intermedia	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Experimental Microcosm In Duke University, North Carolina, United States

Source Dataset Sampling Location
Location Name	USA: North Carolina
Coordinates	Lat. (^o)	36.0	Long. (^o)	-78.0	Alt. (m)		Depth (m)
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F004576	Metagenome / Metatranscriptome	432	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326783_049317_1_609	F004576	N/A	IDSEKEFWLDNVVLCSYDILPPDIRFHIESDSAFSFRAVETEGTRTHLVIQLDKLLTELKDMEFYYRKKTFPEFEDHGKVTFRIIGNGAKLTFTYTLRQDPEDTLPRIREGFASFDISDMDIEFDKTTLKHPHMVPMLSKVWKMQIRMEIEREVETNLNAFMEKLGDRLTESLKGMNRPILGGIEAAKKAVKSAQLTQAYEKR

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.