NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326788_019252

Scaffold Ga0326788_019252


Overview

Basic Information
Taxon OID3300034364 Open in IMG/M
Scaffold IDGa0326788_019252 Open in IMG/M
Source Dataset NameMetatranscriptome of soil microbial communities from experimental microcosm in Duke University, North Carolina, United States - S13 (Eukaryote Community Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)720
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (100.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From Experimental Microcosm In Duke University, North Carolina, United States

Source Dataset Sampling Location
Location NameUSA: North Carolina
CoordinatesLat. (o)36.0Long. (o)-78.0Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007957Metagenome / Metatranscriptome341Y

Sequences

Protein IDFamilyRBSSequence
Ga0326788_019252_105_719F007957AGAAGVNLFGFCGYVSGITIADDPQLTGQKFAIVEFWDKNAAITACLLSSAIVQNQPIHVELYVANETDQQNISAHPELKSKGVPPVVDNAAKQSGTATVARVLASGIVLSKDVKEKAVAWDTGNLNLIQKAEVLGLHAKSNIEEINRQYHITDTVEELAKIAEKKLLELKTTIEANENFQAAKTKALELDSQYGISITALNMFEKAKST
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