NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0348335_001170

Scaffold Ga0348335_001170


Overview

Basic Information
Taxon OID3300034374 Open in IMG/M
Scaffold IDGa0348335_001170 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v4)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)19933
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)24 (82.76%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.124826Long. (o)-75.260873Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F035273Metagenome172Y
F041743Metagenome159Y

Sequences

Protein IDFamilyRBSSequence
Ga0348335_001170_19183_19374F035273N/AMTQYTARELYKIVVQYPNTNRELEFIGMDRGSCIMQAEVAREEGDELMLMQSEETIRVLEKEK
Ga0348335_001170_7803_8456F041743GGAGMSYQTIVDNATYITIDTRRITAQSVSRSGHYKTAERSPAPFMITVGMHDGLKYSENRAVIQDIYTTGRITESNISLNNNSGMNYLTAYQGNIESAQINNITVNGVFGDEIYVDCSGATGSGNLFEKGDYIQPKGNTDTYRYPYIVTSDVAFSTGSNITIPVHRPVLSQTGVALTSGGIKVGNDVRFQLKCMELPSYSVVPYDLVSFSGEFAFIEVIT
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