NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0348335_023440

Scaffold Ga0348335_023440


Overview

Basic Information
Taxon OID3300034374 Open in IMG/M
Scaffold IDGa0348335_023440 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v4)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2893
Total Scaffold Genes12 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)9 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.124826Long. (o)-75.260873Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002733Metagenome / Metatranscriptome534Y
F006094Metagenome / Metatranscriptome382Y
F011124Metagenome / Metatranscriptome295Y

Sequences

Protein IDFamilyRBSSequence
Ga0348335_023440_1736_1948F011124AGGMAMFDTDKTYGATVWDLSIAVVDFEADDYVRNEDGSIKLFTLPNHDYSYICDDIDVHNLQERDEGDNYDG
Ga0348335_023440_1923_2147F002733AGGAMKEIITMAKDNTLWIQLTPTEANALMVMLDSEMQTWHDYGGGIDIKEWETLDLEAYKILAYHKFKTWYMENCSE
Ga0348335_023440_837_1049F006094AGGAGMMLLHEFYSDEDCSRGDISYRKSCVFKEPDGSYTIVLIQDGAIVDELNLLGHSQQYAEDTAEDWVMGVRR
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