NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0348335_064089

Scaffold Ga0348335_064089


Overview

Basic Information
Taxon OID3300034374 Open in IMG/M
Scaffold IDGa0348335_064089 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v4)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1327
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.124826Long. (o)-75.260873Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F031838Metagenome181Y
F098927Metagenome103N

Sequences

Protein IDFamilyRBSSequence
Ga0348335_064089_728_1327F031838N/ATQEYNNTLRAWSQQSVQSGVTWHFGDATYDETHPDTGYYLDFDGLDDNMILDGTDFGSSTNATLYKTFRGDTTDTLQIMFGTNAGPYILAAQSGSVDANLNGAVGSPVYREDGTIPSYSTRGDIYTALIDNTDHTIGVEEANLSVHSSWTSSGFYIGGEYSSVNFDNTGRLYSWAAVDTRLDGRNRDLLETFMISRKTA
Ga0348335_064089_90_704F098927N/AMVIIAPVAALDSIEQMASAIGYKAGFAIPFNSTGTGDVTHRGLHATARRHFLWLVTGQPLDPPAIPDEPTPLTEEETQAIQDAEAELVFPDPESETYDADLVAYHDALTTIRAPLHAYSRAVSERQRAMKAADEVNADRAIYDAHMAALLDTDGIDQATVDALRSQMIVSADPVVDEATLYGRAHVDHVASANGLALIEETELV
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Bioinformatics & Integrated Biology Lab
Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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