NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0348335_122684

Scaffold Ga0348335_122684


Overview

Basic Information
Taxon OID3300034374 Open in IMG/M
Scaffold IDGa0348335_122684 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v4)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)766
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.124826Long. (o)-75.260873Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018706Metagenome233Y
F084165Metagenome / Metatranscriptome112N

Sequences

Protein IDFamilyRBSSequence
Ga0348335_122684_401_553F018706AGGAGGMMVDRVSVLGMSGTAATFGLSTIDTFLGIAVGAVTLVYMCIKLYQEIRKK
Ga0348335_122684_51_404F084165AGAAGMEMARECRNNEFAMQFQASLNNGASGAFTRGTRRMLALIGMFTLSFITCITTIYPSVPLVSTTNITGEGRKEFLFGLLSFPAEQAPLVVTTGHIALFEATVVLPLIIGFYFTPGGRR

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