NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0348335_128528

Scaffold Ga0348335_128528


Overview

Basic Information
Taxon OID3300034374 Open in IMG/M
Scaffold IDGa0348335_128528 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_31 (v4)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)735
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.124826Long. (o)-75.260873Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F006331Metagenome / Metatranscriptome376N
F048963Metagenome / Metatranscriptome147N

Sequences

Protein IDFamilyRBSSequence
Ga0348335_128528_229_735F006331N/AMSEEKKEQTRESLSNEESKDDGSKATRGPTWRMREWGRTAYRNRQAKLRMDGESSSTEAAKRLLRVMAPRLGKRVDDFMYTFGGNTEHTTPLFLTFVLDMCPYQIASMALQTLLDNLQFNLPVGRMAYKIGKAFENQARWDKAMELMHPHKKDLLALDDRSKAMKLKQF
Ga0348335_128528_2_232F048963N/AIEYADFEPTDLPFDWSGVDHEEIKRGFDFFYANNQITGFKMDENGNYVRDQDGKLIAYRTSKQRHQPKSWFNNYYQ
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