NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0348336_002336

Scaffold Ga0348336_002336


Overview

Basic Information
Taxon OID3300034375 Open in IMG/M
Scaffold IDGa0348336_002336 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v4)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)15729
Total Scaffold Genes28 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)21 (75.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.130153Long. (o)-75.249887Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001873Metagenome623Y
F009399Metagenome318N
F093801Metagenome106N

Sequences

Protein IDFamilyRBSSequence
Ga0348336_002336_11291_11584F009399GGCGGMLPLRTGAELRTASHLALRDLTVTADPGSRHVARWETLELAQAALLEYAATTRRPAEQYGVQTQVEAVEYANAHSRGYHRRRPYVIEGNDTTAKGGA
Ga0348336_002336_4409_4648F093801GGAGMFQYPTENTTAPVCPYCQASHPEPEDLDESEAHCIACDDCGKLYGAYCNYQGWKTRCGSNHKWHALNGVRVCSRCGADG
Ga0348336_002336_5800_6525F001873N/ALGVYFLMRIDEMKWWNVLTMLVVLAGGADAEILMMSHDFTEFQHPFWATEADGKGDLIQWDLTDKCGGGSVWLNADGFFNNHLDRQYTAHGYRYGIKRIPGAPVDDISDFITNDWIQHHRDGALEFGGNDSRGMVEFYAEQDISLQPGFLTVTLSNDREFAIWKFNGRVVYTHESGENNLQTFKIDIPDGLDQMRFEFSGSGTADGVIEHIEYHKYSTVPEPSLGDLIDLIGSGVGGLIG
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Institute for Fundamental Biomedical Research
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