NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0348336_003742

Scaffold Ga0348336_003742


Overview

Basic Information
Taxon OID3300034375 Open in IMG/M
Scaffold IDGa0348336_003742 Open in IMG/M
Source Dataset NameAqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_30 (v4)
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)11384
Total Scaffold Genes39 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)29 (74.36%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location NameUSA: Delaware Bay
CoordinatesLat. (o)39.130153Long. (o)-75.249887Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003677Metagenome / Metatranscriptome474Y
F027854Metagenome / Metatranscriptome193N
F085570Metagenome / Metatranscriptome111N

Sequences

Protein IDFamilyRBSSequence
Ga0348336_003742_6985_7269F003677AGGMVDEALYFFEKDVGKKVYEMEYEITYATKWQILAEDKDQAFKIWLENHKVDIATQDGKDVVCSYVKDYTQIGSTKEIAKIKLDIDNDEVIADES
Ga0348336_003742_7405_7635F085570N/AMDKLMHIDSYKIWSYDYDYKNGKKSKTTSIKQHLVSEECIDSKSLINLLSDLDTAWHNHYSKNIKVEVTFEPHEGE
Ga0348336_003742_8142_8381F027854AGGMTDQEAMKLHELIDELRAKLKKSLKEVLQLRKDLDLEREEHQLTQLRYENVKNAINKEVDRLNQRRPDVEIPADEKGVK
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