NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0325419_006528

Scaffold Ga0325419_006528


Overview

Basic Information
Taxon OID3300034389 Open in IMG/M
Scaffold IDGa0325419_006528 Open in IMG/M
Source Dataset NamePopulus deltoides microbial communities from Bellville, Georgia, United States - Leaf-Control-R4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)12740
Total Scaffold Genes16 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)7 (43.75%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Leaf → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)32.1348Long. (o)-81.9657Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000510Metagenome1067Y
F038486Metagenome165Y

Sequences

Protein IDFamilyRBSSequence
Ga0325419_006528_44_268F000510N/AMLDDMQFGGGVWTLSRLKQKKIENYQTKFNKIRKLSREQTLVTSTHPPTEIRTDHGNETSIYILNIYLFLTLVS
Ga0325419_006528_7889_8137F038486N/AMQLMEHSMDSLSISMIFFPTRTILDREIIPTYVMGTSLNQAIKDDSSIPMDFNPNRIIKKDNPLNSQTPMLWGRHPVMIFVT

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