NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0325419_017203

Scaffold Ga0325419_017203


Overview

Basic Information
Taxon OID3300034389 Open in IMG/M
Scaffold IDGa0325419_017203 Open in IMG/M
Source Dataset NamePopulus deltoides microbial communities from Bellville, Georgia, United States - Leaf-Control-R4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6857
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (55.56%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Leaf → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)32.1348Long. (o)-81.9657Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F037820Metagenome167Y

Sequences

Protein IDFamilyRBSSequence
Ga0325419_017203_2734_3165F037820N/AMTRGFDSPDSPLGTQKLLSLVTRGFYSPDSPLGSQKLLSRVTRGVDSPDSPLGTQKLLSRVTRGLYSPDSPLGSQKLLSRVTRGFDRPDSRLRSQKLLSRVTRGFESRDIPLRSQKLLSRVTRGFDSPGSPLRTQKQLSRVRR
Ga0325419_017203_596_1009F037820N/AMTRGFDSPDSPLGTQKLLSLVTRGFYTPDSPPGTQKLLSSVTRGFDRPDSPLRSQKLLSRVTRAFDSPDSPLGTQKLLSLVTRGFYSPDSPLGSQKLLSRVPLEFDSPLGSQKLRSRVTRGLYSLESLLGSQKLRHD
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Institute for Fundamental Biomedical Research
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