NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0325419_022209

Scaffold Ga0325419_022209


Overview

Basic Information
Taxon OID3300034389 Open in IMG/M
Scaffold IDGa0325419_022209 Open in IMG/M
Source Dataset NamePopulus deltoides microbial communities from Bellville, Georgia, United States - Leaf-Control-R4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5623
Total Scaffold Genes15 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)12 (80.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Leaf → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)32.1348Long. (o)-81.9657Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008669Metagenome329Y
F022324Metagenome214Y

Sequences

Protein IDFamilyRBSSequence
Ga0325419_022209_160_363F008669GGAGMPFSMEGMRNRFSVMMWSGRARLDERFERAITFDPTVGSRSNFYWSFRMPFSMQWMKNRYSVMMMSG
Ga0325419_022209_4009_4116F022324GGAMALSTRPSSLARPEFIITEYRFLIHFMEKGIQKLQ
Ga0325419_022209_433_645F008669GGAGMSMEWMRKRYLMMMMSGRARLDGRFERAITFDLTVGSRSNFYWSFRMPFSMQWMKNRYSVMMRSGRTRLE
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