NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0325419_025478

Scaffold Ga0325419_025478


Overview

Basic Information
Taxon OID3300034389 Open in IMG/M
Scaffold IDGa0325419_025478 Open in IMG/M
Source Dataset NamePopulus deltoides microbial communities from Bellville, Georgia, United States - Leaf-Control-R4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)5009
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (30.00%)
Novel Protein Genes5 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (20.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Leaf → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)32.1348Long. (o)-81.9657Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F011092Metagenome295Y
F026451Metagenome197Y

Sequences

Protein IDFamilyRBSSequence
Ga0325419_025478_106_321F026451N/AMRPFVRKAWSFLRILRWAGHLIVRLFLRKAWSFQRILRWAGHQILRSFLRKAWSFLKNFERGRLLDIETVS
Ga0325419_025478_1561_1776F026451N/AMKPFLRKAWSFLRILRWVGHLIFSLFLRKVWSFLRILRWAGHPILRSFFRKAWSFLKNFKRGRLADIETVS
Ga0325419_025478_1917_2114F011092GAGGMILKPFLRKAWSFRRILRWASNLILRPFLKKEWSFLRILSWAGHPILRSFLRKAWSFLKNFERGR
Ga0325419_025478_2425_2640F026451N/AMRPFLRKAWSFLRFLRWAGHLILRPFFRKAWSFLRILRWAGHPILRPFHRKAWSFLKNFKRGRLPDIETVS
Ga0325419_025478_4496_4696F011092N/AMGQNLILRPFLRKAWSFLIILRWAGHLIFRPFLRKAWSFLRILRWAGHLIFRPYLRKAWSFLRILR
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