NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0325419_027318

Scaffold Ga0325419_027318


Overview

Basic Information
Taxon OID3300034389 Open in IMG/M
Scaffold IDGa0325419_027318 Open in IMG/M
Source Dataset NamePopulus deltoides microbial communities from Bellville, Georgia, United States - Leaf-Control-R4
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4702
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (62.50%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Host-Associated → Plants → Phylloplane → Unclassified → Unclassified → Leaf → Understanding The Reciprocal Impacts Of Modified Plant Cell Wall And Associated Microbiome

Source Dataset Sampling Location
Location NameUSA: Georgia
CoordinatesLat. (o)32.1348Long. (o)-81.9657Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F008225Metagenome336Y
F012319Metagenome281Y

Sequences

Protein IDFamilyRBSSequence
Ga0325419_027318_1222_1476F012319N/ALTKAESLQTHKSSAEHSSTAEAEIVRPHRLLQNQKSLTKTDSLQTHKSSPQYSSAAEAEIFMAQRLQQNQKSLEKTDLLQTQKS
Ga0325419_027318_1445_2020F008225GAGMCVCSDSAFVNDFWFCSSLWGLKISASAVELCSDEDLGVCSESVFVNDFWFCSSLWGLKISVSAVEPGSCHDFWDGSESVFVNDLWFCSCLCAMKISASAAELCSGEDLWVCSELVFLNDFWFCSSLCAMKISASAVELCSGEDLRVCSESVFVNYFWFCNSLYGLRISACAVELCSGKDLWVWNESFFVN
Ga0325419_027318_208_849F008225AGTAGMWLKISGSSVEPGSREDFRVCSESVFVNDFWFCSSLWGLKISASAVEPCSCHDFCVWNESVFVNDFWFCCSLCAMKISASAAELCSGEDLWVCNESVFVYDFWFCSTLCAMKISASASELYFVEDLWVCSESVFVNDFWFCSSLWGLKISASAVELCSVEDLGLCIESVFVNDFWFCSSLWPEDFSFSHRTLLWWGFVGVQRISFRQWFLILQ
Ga0325419_027318_3463_3741F012319N/ALTETDSLQTRKSSPEHSSTVEAEIFMAQRLLQNQKSLTKTDSLQTHKSSPEHSSAAEAEIFVAQRLLQNQKSLPKTDSLQTHKSSPIHNSMA
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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