NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0334960_045044

Scaffold Ga0334960_045044


Overview

Basic Information
Taxon OID3300034402 Open in IMG/M
Scaffold IDGa0334960_045044 Open in IMG/M
Source Dataset NameSub-biocrust soil microbial communities from Mojave Desert, California, United States - 56SNS
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)611
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Desert → Sub-Biocrust Soil → Soil And Biocrust Microbial Communities From Mojave Desert, California, United States

Source Dataset Sampling Location
Location NameUSA: California
CoordinatesLat. (o)34.7856Long. (o)-115.66Alt. (m)Depth (m)
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F097997Metagenome / Metatranscriptome104Y
F101827Metagenome102Y

Sequences

Protein IDFamilyRBSSequence
Ga0334960_045044_330_611F097997AGGAMRLCRILAVLGLLAALSVPAAASAAETKNHVGLHDMTCTGITAMGKGLTPNAAMQLTLTNRDNGSTLAGQTVRTSAKGEFMVKLPARLNKVLSI
Ga0334960_045044_3_281F101827N/ARYEGEVWFRASRPGVEVQVNLFELRGGRRFAVDTVGAVARAGTWQRLDVSHDAHRKGATLAVEILAPTLTSGTHLLVDDLVVQATSSSMSSH

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