Scaffold Ga0348337_023945

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0348337_023945

Scaffold Ga0348337_023945

Overview

Basic Information
Taxon OID	3300034418 Open in IMG/M
Scaffold ID	Ga0348337_023945 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 (v4)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2986
Total Scaffold Genes	8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	3 (37.50%)
Novel Protein Genes	3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	2 (66.67%)
Associated Families	3

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Candidatus Marinimicrobia → Candidatus Marinimicrobia bacterium	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.149325	Long. (^o)	-75.288339	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F002528	Metagenome / Metatranscriptome	551	Y
F008547	Metagenome / Metatranscriptome	331	Y
F032086	Metagenome	181	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0348337_023945_2390_2674	F008547	AGGA	MSVTIYLTDHRGKQIAFFYRIDSERYLTAPQLIWACRQHPEYQGTAESKEHFIEQAKDVMRELNRSPKVCKDCGLTSPKMEAQLTCPDCLINDQ
Ga0348337_023945_2664_2852	F032086	N/A	MTSNNEPTFLDMNDLCDDSLEALIQHYLKLKHRMPDNISVRERLLELEREQFEREKQTEDKE
Ga0348337_023945_33_344	F002528	GAGG	MKKTPTTPTKHCPTSDKANASLAPASTAASDLPTIRIVSEEEEMHVKLGLEMEDKTHDMLVKWGKEVASDEDYINIAISDGIKHLISSDNSDSLNKEDTLPLV

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