Scaffold Ga0348337_035111

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0348337_035111

Scaffold Ga0348337_035111

Overview

Basic Information
Taxon OID	3300034418 Open in IMG/M
Scaffold ID	Ga0348337_035111 Open in IMG/M
Source Dataset Name	Aqueous microbial communities from the Delaware River and Bay under freshwater to marine salinity gradient to study organic matter cycling in a time-series - Viral MetaG DEL_Aug_28 (v4)
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	2234
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	1 (50.00%)
Associated Families	2

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Coastal → Unclassified → Aqueous → Aqueous Microbial Communities From The Delaware River/Bay And Chesapeake Bay Under Freshwater To Marine Salinity Gradient To Study Organic Matter Cycling In A Time-Series

Source Dataset Sampling Location
Location Name	USA: Delaware Bay
Coordinates	Lat. (^o)	39.149325	Long. (^o)	-75.288339	Alt. (m)		Depth (m)
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F003035	Metagenome	512	N
F023836	Metagenome	208	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0348337_035111_150_554	F023836	GGA	VDWRLATGTNQVLLDVSDGTSLNRIFIYHRNSPVQLRMRARANNADLTNQGESSTGYSDIQKIAFAYKTNDFELYRNGSSISSDTSGSLAALGTLTDIDLGQATDASGQANMHIRAVALYKTRLTDDQLADLTS
Ga0348337_035111_1760_2101	F003035	N/A	MAHFDYYLTADTKDAILADLRSKGFEWYDTDDMGNRTGTRDPKRMEVASVRGVGSCIYLEHLIETPAVIDDEGNVVTPPTFTTTFHANARMREETTFDTAMPQPPTTPANVWL

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