NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310143_00572

Scaffold Ga0310143_00572


Overview

Basic Information
Taxon OID3300034523 Open in IMG/M
Scaffold IDGa0310143_00572 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - K-4-A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)18431
Total Scaffold Genes23 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)11 (47.83%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.812Long. (o)-98.262Alt. (m)Depth (m)2943
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005584Metagenome395Y
F008741Metagenome328Y
F009142Metagenome322Y
F030060Metagenome186N

Sequences

Protein IDFamilyRBSSequence
Ga0310143_00572_1607_1924F005584AGGTGGMAGSIPTSYFATDLSYMIEDLYQSVTGLGSNSVSASVTDLTTASELEIGGEVFRVTQSLVVLASGISAPVIGSLCTVSGVERMIGGFSQSTDGLSFTIELAEITT
Ga0310143_00572_1941_2615F008741GAGMSVKTIKYSQRLGDVLRCLPAAKHLADQGHEVFFDCFAQYHGVFELTSYVKAGHRMGDVIDLEVWPNQYEAYRKSKRSWTDFVYSHPEIKDADKTNIVLDKLDDKPAEGLPEPYNLVAPFGLSQGYYRNPLELIVRARQTMGKDNFFVLCPDDIKIQGLNTYTAKSLEQMAKAIRGATDFWAINSTPIILASATRRDKQTSFFPQKDEWETDNIFSFEGMITMD
Ga0310143_00572_3366_3878F030060N/AMTKGIITSESPEIHWQHLNVAGGRVLDLGCAFWTEAERQEGNGTTKYFLSQKPEFYMGVDINQGDIQTLSQQYPQGKFLCEKADSAFQMDTWITENSITHIKCDIEGDETQLLQIGNVHNLKEIAIELHYSDAWLKEFIDWFDSIGFECYRHDSISFCAEISVIYGRLKC
Ga0310143_00572_703_1194F009142N/AMTNSVQINVEDALDNILANVSGLNVYKTNRVGAKLFPFATISASVGGQLLGNYTGVYEVAVTIDYSDTAAKISQEAFDAEYCSIFEALYSETPPLFTKIQSNIVDTKVYTARITGQTPTIRTAKRAWQRGLKISLICTPSELDDGLRFLDFSEQRNSMYVAVI

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