Basic Information | |
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Taxon OID | 3300034523 Open in IMG/M |
Scaffold ID | Ga0310143_00572 Open in IMG/M |
Source Dataset Name | Fracking water microbial communities from deep shales in Oklahoma, United States - K-4-A |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 18431 |
Total Scaffold Genes | 23 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (47.83%) |
Novel Protein Genes | 4 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
Associated Families | 4 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Oklahoma | |||||||
Coordinates | Lat. (o) | 35.812 | Long. (o) | -98.262 | Alt. (m) | Depth (m) | 2943 | Location on Map |
Zoom: | Powered by OpenStreetMap © |
Family | Category | Number of Sequences | 3D Structure? |
---|---|---|---|
F005584 | Metagenome | 395 | Y |
F008741 | Metagenome | 328 | Y |
F009142 | Metagenome | 322 | Y |
F030060 | Metagenome | 186 | N |
Protein ID | Family | RBS | Sequence |
---|---|---|---|
Ga0310143_00572_1607_1924 | F005584 | AGGTGG | MAGSIPTSYFATDLSYMIEDLYQSVTGLGSNSVSASVTDLTTASELEIGGEVFRVTQSLVVLASGISAPVIGSLCTVSGVERMIGGFSQSTDGLSFTIELAEITT |
Ga0310143_00572_1941_2615 | F008741 | GAG | MSVKTIKYSQRLGDVLRCLPAAKHLADQGHEVFFDCFAQYHGVFELTSYVKAGHRMGDVIDLEVWPNQYEAYRKSKRSWTDFVYSHPEIKDADKTNIVLDKLDDKPAEGLPEPYNLVAPFGLSQGYYRNPLELIVRARQTMGKDNFFVLCPDDIKIQGLNTYTAKSLEQMAKAIRGATDFWAINSTPIILASATRRDKQTSFFPQKDEWETDNIFSFEGMITMD |
Ga0310143_00572_3366_3878 | F030060 | N/A | MTKGIITSESPEIHWQHLNVAGGRVLDLGCAFWTEAERQEGNGTTKYFLSQKPEFYMGVDINQGDIQTLSQQYPQGKFLCEKADSAFQMDTWITENSITHIKCDIEGDETQLLQIGNVHNLKEIAIELHYSDAWLKEFIDWFDSIGFECYRHDSISFCAEISVIYGRLKC |
Ga0310143_00572_703_1194 | F009142 | N/A | MTNSVQINVEDALDNILANVSGLNVYKTNRVGAKLFPFATISASVGGQLLGNYTGVYEVAVTIDYSDTAAKISQEAFDAEYCSIFEALYSETPPLFTKIQSNIVDTKVYTARITGQTPTIRTAKRAWQRGLKISLICTPSELDDGLRFLDFSEQRNSMYVAVI |
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