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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034523 Open in IMG/M |
| Scaffold ID | Ga0310143_00572 Open in IMG/M |
| Source Dataset Name | Fracking water microbial communities from deep shales in Oklahoma, United States - K-4-A |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 18431 |
| Total Scaffold Genes | 23 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 11 (47.83%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 2 (50.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Oklahoma | |||||||
| Coordinates | Lat. (o) | 35.812 | Long. (o) | -98.262 | Alt. (m) | Depth (m) | 2943 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F005584 | Metagenome | 395 | Y |
| F008741 | Metagenome | 328 | Y |
| F009142 | Metagenome | 322 | Y |
| F030060 | Metagenome | 186 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0310143_00572_1607_1924 | F005584 | AGGTGG | MAGSIPTSYFATDLSYMIEDLYQSVTGLGSNSVSASVTDLTTASELEIGGEVFRVTQSLVVLASGISAPVIGSLCTVSGVERMIGGFSQSTDGLSFTIELAEITT |
| Ga0310143_00572_1941_2615 | F008741 | GAG | MSVKTIKYSQRLGDVLRCLPAAKHLADQGHEVFFDCFAQYHGVFELTSYVKAGHRMGDVIDLEVWPNQYEAYRKSKRSWTDFVYSHPEIKDADKTNIVLDKLDDKPAEGLPEPYNLVAPFGLSQGYYRNPLELIVRARQTMGKDNFFVLCPDDIKIQGLNTYTAKSLEQMAKAIRGATDFWAINSTPIILASATRRDKQTSFFPQKDEWETDNIFSFEGMITMD |
| Ga0310143_00572_3366_3878 | F030060 | N/A | MTKGIITSESPEIHWQHLNVAGGRVLDLGCAFWTEAERQEGNGTTKYFLSQKPEFYMGVDINQGDIQTLSQQYPQGKFLCEKADSAFQMDTWITENSITHIKCDIEGDETQLLQIGNVHNLKEIAIELHYSDAWLKEFIDWFDSIGFECYRHDSISFCAEISVIYGRLKC |
| Ga0310143_00572_703_1194 | F009142 | N/A | MTNSVQINVEDALDNILANVSGLNVYKTNRVGAKLFPFATISASVGGQLLGNYTGVYEVAVTIDYSDTAAKISQEAFDAEYCSIFEALYSETPPLFTKIQSNIVDTKVYTARITGQTPTIRTAKRAWQRGLKISLICTPSELDDGLRFLDFSEQRNSMYVAVI |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |