NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310143_00759

Scaffold Ga0310143_00759


Overview

Basic Information
Taxon OID3300034523 Open in IMG/M
Scaffold IDGa0310143_00759 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - K-4-A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)14344
Total Scaffold Genes29 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)13 (44.83%)
Novel Protein Genes4 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Associated Families4

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.812Long. (o)-98.262Alt. (m)Depth (m)2943
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F007030Metagenome / Metatranscriptome359Y
F053148Metagenome / Metatranscriptome141N
F057925Metagenome135N
F078616Metagenome116N

Sequences

Protein IDFamilyRBSSequence
Ga0310143_00759_12674_12901F078616GGAGGVINKKTITSAVAAGWISFSEPKERQLSRNFAQPIEAFDSELAYRLWNNGADTDTVARAIGCKRRFVAQIIKEYKR
Ga0310143_00759_14174_14344F057925N/ATYRNRTNPSVVVEILAQDAQLRLGELRWPVVVYRRLDNGTVYVRSKAEFDAKFAPE
Ga0310143_00759_2671_3489F007030AGGAMTTTKAESPQMEDPFIYAPQPTSKVQAVTQAGTRPSIHVSLYAYGGISAACMMSWVDLTATFARSDRQTDLRTIREDALISRSRCRATKWFLDSGKDVWVQIDHDIEFAAADIVRMAELAHDHQATVCIPYSCRSLPARPALRPKVEHLQALKHQVNDAECAAELVPVTMFASGCLAIPRKCLLATLDALEGSGVQNPYRIDWCEDVRVERFPTLWMPLAMESMPGKLEYLSEDYAAAVRMTLAGVKHLSMKPRKQLNHWGEFPFSFAPYAG
Ga0310143_00759_3486_3782F053148N/AMEAPHLVKIGVQRGWLSYPKDMAFKEDGTPAPVIQDEPEVTEQRHTPDMARKAYDLRDRGLSLNDVATACQVPRGSVVYLITKGHELYLASQRKDIEP
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