NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310143_00805

Scaffold Ga0310143_00805


Overview

Basic Information
Taxon OID3300034523 Open in IMG/M
Scaffold IDGa0310143_00805 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - K-4-A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)13480
Total Scaffold Genes18 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)15 (83.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes → environmental samples → uncultured Caudovirales phage(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.812Long. (o)-98.262Alt. (m)Depth (m)2943
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F003643Metagenome / Metatranscriptome475N
F010085Metagenome / Metatranscriptome308Y
F043932Metagenome / Metatranscriptome155Y

Sequences

Protein IDFamilyRBSSequence
Ga0310143_00805_11461_11670F010085GGAGMKIQYVSKYLALAEEGLVERINCPLDQGPLSVNQTHDDTIYLYCLSCEYKNNIGLLLYDKLKKLVDNVL
Ga0310143_00805_6141_6515F043932AGGAMAKFKSLLNLVTLQADPNSGSAGDVYFNTVSKNLKIHNGLSWVDLTPGSSDPAPFYMHTHTYDGDVHTITIDNMVTFDDDINNIASTEEQIPAIIGFDGGSPNSIYDNVSYKELTLLDGGEIGN
Ga0310143_00805_8475_8702F003643AGGAGGMNQDLNNDGKVTMQEKILAALASYGRHFLGAAIALYMTGNTDPGDLIKGGIAAVLPVILKALNTNEPAFGFTKKQ
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