NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310143_01443

Scaffold Ga0310143_01443


Overview

Basic Information
Taxon OID3300034523 Open in IMG/M
Scaffold IDGa0310143_01443 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - K-4-A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)6882
Total Scaffold Genes19 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)10 (52.63%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.812Long. (o)-98.262Alt. (m)Depth (m)2943
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005702Metagenome392Y
F010463Metagenome303N

Sequences

Protein IDFamilyRBSSequence
Ga0310143_01443_3362_3745F010463N/AMVLAATIHRVKMCEDKLREFEQMVTTLTSTMAQNRAELASKGLERFVIGVTTPLDIPKELIPTRGRDGARRNREYSTVKKRWTLWKHQLDSGMSMSELARAWGVHRTTIMNAKSRNFAVRKAKGGSR
Ga0310143_01443_6639_6881F005702N/ARFAETEDSLVIIFLVAFFGLLILQGVRLFAKHIDQQNYERRQFYLYVAAELEKMDKIVADGNQPKQPELVLPTKNWVGRN
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