Basic Information | |
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Taxon OID | 3300034523 Open in IMG/M |
Scaffold ID | Ga0310143_03401 Open in IMG/M |
Source Dataset Name | Fracking water microbial communities from deep shales in Oklahoma, United States - K-4-A |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 2812 |
Total Scaffold Genes | 9 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 2 (22.22%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (33.33%) |
Associated Families | 3 |
Taxonomy | |
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Not Available | (Source: ) |
Source Dataset Ecosystem |
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Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
Source Dataset Sampling Location | ||||||||
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Location Name | USA: Oklahoma | |||||||
Coordinates | Lat. (o) | 35.812 | Long. (o) | -98.262 | Alt. (m) | Depth (m) | 2943 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F067885 | Metagenome | 125 | N |
F096904 | Metagenome | 104 | Y |
F104709 | Metagenome | 100 | N |
Protein ID | Family | RBS | Sequence |
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Ga0310143_03401_147_716 | F104709 | N/A | VEARTIILTLYTSGKLRQIARQLATPDLAPDLEHELVIRLYEKPADKIEAMHAGGYLNFYVVRMAINLYRSRNSKFQRDFRHNELREEIANQQMEAADEPYDQRPDAIFNRALEVMDGWAKAGAYPYDKQLFLLWLELGNKKLIERHTKIPWRSISYTINNCKQRLKHELGSDYHLAFGGIDCLGDEPL |
Ga0310143_03401_2373_2660 | F096904 | N/A | MTLPELQHLLNLIDADNERTLEAYKLGIDLTEFREIAQQVIDLLLKHVLNEDQYECLTWWMYEKDYGRREDLQMWDKDGKEICRTVEELHQFLFA |
Ga0310143_03401_900_1127 | F067885 | GGA | MTLDEAMQVLSVKHKLDGYYASQTMSLSPSEVAMLENVANANGYGRTNWWCGSCAVSRLQEMMADAQESRARLST |
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