NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0310143_03401

Scaffold Ga0310143_03401


Overview

Basic Information
Taxon OID3300034523 Open in IMG/M
Scaffold IDGa0310143_03401 Open in IMG/M
Source Dataset NameFracking water microbial communities from deep shales in Oklahoma, United States - K-4-A
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)2812
Total Scaffold Genes9 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (22.22%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa

Source Dataset Sampling Location
Location NameUSA: Oklahoma
CoordinatesLat. (o)35.812Long. (o)-98.262Alt. (m)Depth (m)2943
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F067885Metagenome125N
F096904Metagenome104Y
F104709Metagenome100N

Sequences

Protein IDFamilyRBSSequence
Ga0310143_03401_147_716F104709N/AVEARTIILTLYTSGKLRQIARQLATPDLAPDLEHELVIRLYEKPADKIEAMHAGGYLNFYVVRMAINLYRSRNSKFQRDFRHNELREEIANQQMEAADEPYDQRPDAIFNRALEVMDGWAKAGAYPYDKQLFLLWLELGNKKLIERHTKIPWRSISYTINNCKQRLKHELGSDYHLAFGGIDCLGDEPL
Ga0310143_03401_2373_2660F096904N/AMTLPELQHLLNLIDADNERTLEAYKLGIDLTEFREIAQQVIDLLLKHVLNEDQYECLTWWMYEKDYGRREDLQMWDKDGKEICRTVEELHQFLFA
Ga0310143_03401_900_1127F067885GGAMTLDEAMQVLSVKHKLDGYYASQTMSLSPSEVAMLENVANANGYGRTNWWCGSCAVSRLQEMMADAQESRARLST
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