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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |
| Basic Information | |
|---|---|
| Taxon OID | 3300034524 Open in IMG/M |
| Scaffold ID | Ga0310146_00103 Open in IMG/M |
| Source Dataset Name | Fracking water microbial communities from deep shales in Oklahoma, United States - K-7-2 |
| Source Dataset Category | Metagenome |
| Source Dataset Use Policy | Open |
| Sequencing Center | DOE Joint Genome Institute (JGI) |
| Sequencing Status | Permanent Draft |
| Scaffold Components | |
|---|---|
| Scaffold Length (bps) | 134503 |
| Total Scaffold Genes | 154 (view) |
| Total Scaffold Genes with Ribosome Binding Sites (RBS) | 120 (77.92%) |
| Novel Protein Genes | 4 (view) |
| Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (75.00%) |
| Associated Families | 4 |
| Taxonomy | |
|---|---|
| All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
| Source Dataset Ecosystem |
|---|
| Environmental → Terrestrial → Deep Subsurface → Unclassified → Unclassified → Fracking Water → Subsurface Microbial Communities From Deep Shales In Ohio And West Virginia, Usa |
| Source Dataset Sampling Location | ||||||||
|---|---|---|---|---|---|---|---|---|
| Location Name | USA: Oklahoma | |||||||
| Coordinates | Lat. (o) | 35.812 | Long. (o) | -98.262 | Alt. (m) | Depth (m) | 2943 | Location on Map |
| Zoom: | Powered by OpenStreetMap © | |||||||
| Family | Category | Number of Sequences | 3D Structure? |
|---|---|---|---|
| F075996 | Metagenome / Metatranscriptome | 118 | N |
| F077200 | Metagenome / Metatranscriptome | 117 | N |
| F105007 | Metagenome | 100 | N |
| F105008 | Metagenome / Metatranscriptome | 100 | N |
| Protein ID | Family | RBS | Sequence |
|---|---|---|---|
| Ga0310146_00103_119648_120598 | F105007 | AGGA | MEDADVLEGIYRKFCEKGDISYRESDIVFRIAQRFFSRKSYLSLKDVVPKWYEKVKSKILNGGRGVFMHTVPLGSAEDFYRNLGTTGDPANLACCLTEINDIFREMKRPVCINLVILRDKDQLCTLGDGIPKTLLIKRFDKVNNKNAYRFLRADTLRRLGNFVYIDLDGIKTREFDIACAYRYEMKEKNCAVDRLAQVYAAVFLELENAGIKFLTCSNRAGYAYGYFDELGVFADEKDAERIEGVLKTSDCIAESLKGAVREFSVRDLYLFSPAKDCELSMNDPYFRKLVKSHVSQFFPEKRKDAVEEEEWLDITR |
| Ga0310146_00103_124162_124986 | F105008 | N/A | MTAIYDIAREEMTKKGDISLHTADGLFEAFSLIMQFKERVEFLPWYLTVLRETRKGRTGNFTTTVPFVWKKGDVFSAVRDILETLPQRCRTEEILGPVPVVSAPGCAVRNGYAHLSRAGMFDLLFPDHDILFEIPCETGGSFRGLMCRSAAKAAVAAGMSAGIVSFSSEREWFGRAFFCDRESRDVFAELLRLDEELLKIALLEKGAEISGSFPKMFPDCDWLETCDAGTVLNLDGRRYLVGRTPEEALAQGFLSCIRYVKDRLSDDGYLDIIR |
| Ga0310146_00103_3245_4006 | F077200 | AGGAG | MVKFTVIEVKTQPNLKRIEEYAKRYGMTTEEALSKKRIGEDYFPIRDQQVVSVGLLNFVSEKEDSVGIMAAIYTGEEKKVLEETAKKLEKVVKATGKPFFITGDGRKYALELLAGRAMAHMIEAKRKDQEIIPEMKEMIKLLSSTKNGYLKPFDVRDSIDLQAAFGLGTDRTPAPDSLRYENKDLPALAEETKRSVLDMMTNYAAYLESQGEKIKPVVYKLNEKIFKTVEIFKFPEEEPDTEKGEINIVDIDR |
| Ga0310146_00103_54465_55145 | F075996 | AGAAGG | MLNSSTGQAVGVLLPYWSYIPTDRISPKGLLYPVSQIMKEGDLLRFVMLVGGAKEEVSMAGKDFFWSDVNKMYLPEYCLIDITAKFKDRICTFTGLYAGKDGLFANGKKVGSFKDISGIFAHYGLSEVWNLITGDIRPSCGVYRYGRLFVPETEVCLGLLSERANFPKGYDMKDLGRVERILEDAGVFEIPEEISLADVEEKLSKFAEVEKILDGFADRDEETLLR |
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Bioinformatics & Integrated Biology Lab Institute for Fundamental Biomedical Research Biomedical Sciences Research Center "Alexander Fleming" |