NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326755_007545

Scaffold Ga0326755_007545


Overview

Basic Information
Taxon OID3300034628 Open in IMG/M
Scaffold IDGa0326755_007545 Open in IMG/M
Source Dataset NameSeawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 543_2961
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1019
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameAtlantic Ocean
CoordinatesLat. (o)14.7528Long. (o)-44.9788Alt. (m)Depth (m)2961
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F051571Metagenome144Y
F096262Metagenome105N

Sequences

Protein IDFamilyRBSSequence
Ga0326755_007545_319_576F096262N/AMGVSTVGTGADLCSGFKITGTALTQGDATFMGPAIAQAASGGTGVANCVTQEKTALGVTSGNTLDIQIAVTTAATIDASCTIQFE
Ga0326755_007545_717_1016F051571N/AMVRRRRASRRRAPRTFGINVIETGTALALISQVNAGAAVQQFLGGNLNAGLSTISKAANTNKQAIIKTLIGSMVAKVAVKTLSRGSPVLASLGPIKVRA

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