NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326755_020662

Scaffold Ga0326755_020662


Overview

Basic Information
Taxon OID3300034628 Open in IMG/M
Scaffold IDGa0326755_020662 Open in IMG/M
Source Dataset NameSeawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 543_2961
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)647
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameAtlantic Ocean
CoordinatesLat. (o)14.7528Long. (o)-44.9788Alt. (m)Depth (m)2961
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000730Metagenome / Metatranscriptome917Y
F060030Metagenome133N

Sequences

Protein IDFamilyRBSSequence
Ga0326755_020662_280_645F000730N/APPEIIPLVWFSCIAVTVYVFFRVFSSTLKEKFKQTNLSRKKEQGSIHTDSQIDDLINNAPRILNEINKQIKEQELSGVTSEQMKGLLQKKQMLELVTNNAEVINIIGKPIIKKLLGLVKN
Ga0326755_020662_2_280F060030N/AMVLQKLLLEEGVKRGLKASREYSVSVLGYDFIGLISRLAIFFITGFLINAYFQATIQGGIWLNSLAGFFGVKFPDTLPDWTVKLFTTGYHNIT

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