NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326756_004359

Scaffold Ga0326756_004359


Overview

Basic Information
Taxon OID3300034629 Open in IMG/M
Scaffold IDGa0326756_004359 Open in IMG/M
Source Dataset NameSeawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 543_2600
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1655
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameAtlantic Ocean
CoordinatesLat. (o)14.7528Long. (o)-44.9788Alt. (m)Depth (m)2600
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F018619Metagenome234Y
F083250Metagenome113Y

Sequences

Protein IDFamilyRBSSequence
Ga0326756_004359_1433_1654F083250AGGAGGMAWTAPRDWTGISNDIVTAAMLNVDVRDNLGVLSTHTHTGAAGFGASSMSGLTLAALATLTFADQSANPDAAGE
Ga0326756_004359_969_1286F018619GGAMAVAGDLNTHIRDNLLVLSTHAHSGAAGMGSSTLSGVSLSALAVPVLADQSGNPSTAGRLQRNGNNLVYYGAALVGLYADGAAGVATLRTLGTGSAQAAAGNHTH

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