NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326756_009581

Scaffold Ga0326756_009581


Overview

Basic Information
Taxon OID3300034629 Open in IMG/M
Scaffold IDGa0326756_009581 Open in IMG/M
Source Dataset NameSeawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 543_2600
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1097
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameAtlantic Ocean
CoordinatesLat. (o)14.7528Long. (o)-44.9788Alt. (m)Depth (m)2600
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000782Metagenome894Y
F012880Metagenome276Y

Sequences

Protein IDFamilyRBSSequence
Ga0326756_009581_159_404F000782GAGGMTKQQFKSSVKGIFSVRWLKNDGTERYLHRCILGLTKKVEGQPFEHTDYVLVYKIGNGYGTQRRWGNINPNTITQINGVAV
Ga0326756_009581_401_574F012880GGAGMKFNAITLIWSIALMLLIFQFCLLWIDWEFTNTIAYKFMLLLDGFMFGMVMMDWSKS

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