NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326756_012982

Scaffold Ga0326756_012982


Overview

Basic Information
Taxon OID3300034629 Open in IMG/M
Scaffold IDGa0326756_012982 Open in IMG/M
Source Dataset NameSeawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 543_2600
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)953
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)3 (100.00%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria → PVC group → Planctomycetes → Planctomycetia → Planctomycetales → Planctomycetaceae → unclassified Planctomycetaceae → Planctomycetaceae bacterium TMED10(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameAtlantic Ocean
CoordinatesLat. (o)14.7528Long. (o)-44.9788Alt. (m)Depth (m)2600
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F012032Metagenome / Metatranscriptome284Y
F012880Metagenome276Y
F016013Metagenome250Y

Sequences

Protein IDFamilyRBSSequence
Ga0326756_012982_333_509F012880GAGMKYNIIAFIWSTALVLLTFQICLAWIDWDFTNTIVYKFVLIMNGFMFGMVITDWSNNA
Ga0326756_012982_502_789F016013GGAGMPKDIIPIKSVNAVDISPLLREVIEYTKDQNAVGDLETLISKVPSKDSLDWKLISGVLCNAIIEWIAKDTSNRKDLLVHLQSEVGYLLQRMGLTM
Ga0326756_012982_61_336F012032AGGAMTKQQFKDTVGIGFFSCKWLKNDGQVAKIKRGILGQYAWRFTNDPQANKDNFQEHDDYVLAFRVGSGLLPEHTRWASINPNTVFDINRVAV
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