NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326756_031647

Scaffold Ga0326756_031647


Overview

Basic Information
Taxon OID3300034629 Open in IMG/M
Scaffold IDGa0326756_031647 Open in IMG/M
Source Dataset NameSeawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 543_2600
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)637
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameAtlantic Ocean
CoordinatesLat. (o)14.7528Long. (o)-44.9788Alt. (m)Depth (m)2600
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F005883Metagenome / Metatranscriptome387Y

Sequences

Protein IDFamilyRBSSequence
Ga0326756_031647_240_491F005883N/AMDITEVIGEHGLGKSGMVYRRGQQIVLENERTGEYRAVKVVMHDTRQGWLAENGEGEWQWYRLNNEYWPDETDYWKYVKKVGT
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Biomedical Sciences Research Center "Alexander Fleming"
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