NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0370545_000397

Scaffold Ga0370545_000397


Overview

Basic Information
Taxon OID3300034643 Open in IMG/M
Scaffold IDGa0370545_000397 Open in IMG/M
Source Dataset NameMetatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_120 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3917
Total Scaffold Genes8 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)4 (50.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (50.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000329Metagenome / Metatranscriptome1287Y
F004984Metagenome / Metatranscriptome416Y

Sequences

Protein IDFamilyRBSSequence
Ga0370545_000397_1479_1757F000329GGAGMESKAMVAVQESWTLSGAFLQVGEPVTLVIEDERFFGWVAAASQAHSLVRVPIEFKRGDKRVQELIPVENIQRLSAYLQAHPELRKAKEKGA
Ga0370545_000397_1816_2190F004984N/AMFGACQRLVHSGRKQAGIQYLMRRWRAIPADLQTRFLHDAFLPLPVDTQASITDLLLVRSREAGIAERTAALRHQMRADREQTVRLDAVAAGITAAYRTRWHRLGGLAALCALAALLTLLSTTF
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