NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0370545_010067

Scaffold Ga0370545_010067


Overview

Basic Information
Taxon OID3300034643 Open in IMG/M
Scaffold IDGa0370545_010067 Open in IMG/M
Source Dataset NameMetatranscriptome of soil microbial communities from the East River watershed near Crested Butte, Colorado, United States - ER_RNA_120 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1407
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)2 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
All Organisms → cellular organisms → Bacteria(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Unclassified → Unclassified → Soil → Soil Microbial Communities From The East River Watershed Near Crested Butte, Colorado, United States

Source Dataset Sampling Location
Location NameUSA: Colorado
CoordinatesLat. (o)38.9206Long. (o)-106.9489Alt. (m)Depth (m)20
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F021438Metagenome / Metatranscriptome219Y
F055478Metagenome / Metatranscriptome138Y
F064480Metagenome / Metatranscriptome128Y

Sequences

Protein IDFamilyRBSSequence
Ga0370545_010067_1036_1380F021438N/AMKAIKTPTQLRLTQDLLERADGLIEVMAADPEVRALGMPTRTAVLRLSIARGLRDLEGQYQQPTPADASVPRPPTMPDDVTPPSREGTLSHGYAGRDGEDQASEDQASASHRDW
Ga0370545_010067_434_607F055478GGAGGMHPIMPRWGIRGMDDFTVEELARLHQKLEGWIRQRAPQTERTRRRPWVMQPKTAHPA
Ga0370545_010067_654_788F064480AGGAGMSSTTDHVHEGRDQTAHPSTDAPVADGPLDAPREMEASFEEIER
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