NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0372973_034288

Scaffold Ga0372973_034288


Overview

Basic Information
Taxon OID3300034650 Open in IMG/M
Scaffold IDGa0372973_034288 Open in IMG/M
Source Dataset NameMetatranscriptome of hot spring phototrophic mat microbial communities from Mushroom Spring, Yellowstone National Park, Wyoming, United States - 20050701_1600_MSt12 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)758
Total Scaffold Genes3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)1 (33.33%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Thermal Springs → Hot (42-90C) → Unclassified → Hot Spring Phototrophic Mat → Phototrophic Mat Microbial And Viral Communities From Various Hot Springs In Yellowstone National Park, Wyoming, United States

Source Dataset Sampling Location
Location NameUSA: Wyoming
CoordinatesLat. (o)44.5387Long. (o)-110.798Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002229Metagenome / Metatranscriptome580Y
F002795Metagenome / Metatranscriptome529Y
F059548Metagenome / Metatranscriptome133N

Sequences

Protein IDFamilyRBSSequence
Ga0372973_034288_1_285F002229N/AAEIRASLDDSGLYGMVLGGVTWMRLSSGAGWWTVIGGRRVTATLAAVGWCWVADGLGARGYWSPALACVPTEVRALCGDGCADDEDEEGGDGDG
Ga0372973_034288_236_550F002795N/AMVVRMMRMRRVAMATDSGLVLRGMVAAYREFVSRRDGKLYRVVTVFGDLVAGGTVLCAVDGYDVFVDSPGYTRGEMVELPARLQFVRDASGRPVVRLYVDEGVR
Ga0372973_034288_550_756F059548AGGAGMPTRREDALWSVVHRRSSHLRALLDALDDVDMSIAYELHYYPYAIVELLRVRDDASPIVLRSAYVQANR
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