NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0316598_093165

Scaffold Ga0316598_093165


Overview

Basic Information
Taxon OID3300034652 Open in IMG/M
Scaffold IDGa0316598_093165 Open in IMG/M
Source Dataset NameMetatranscriptome of peat soil microbial communities from wetland fen in Alaska, United States - Frozen_pond_02R_16 (Metagenome Metatranscriptome)
Source Dataset CategoryMetatranscriptome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)834
Total Scaffold Genes1 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families1

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Terrestrial → Soil → Wetlands → Unclassified → Untreated Peat Soil → Peat Soil Microbial Communities From Wetland Fen In Alaska, United States

Source Dataset Sampling Location
Location NameUSA: Alaska
CoordinatesLat. (o)64.9142Long. (o)-147.835Alt. (m)Depth (m)0
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F030637Metagenome / Metatranscriptome184Y

Sequences

Protein IDFamilyRBSSequence
Ga0316598_093165_251_832F030637N/AVTSREVGSSSECYEHRPCRPIGLPAATSTLRFPARPGGSTSCVVPRLLAKSGSSSRELGLLFRVRTASNLPPARMRGAPSMGSRSQSRSEPWRSTCERGSQPRPTFRPRCFAHPRRLTLSSTSWACFIPLPRPGFTFQGFVPATWPRRLVVGPCPPVVGPRLLPPRCRGGSRSGDLAFRALIRVAIRSHRPGV
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