NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326741_001800

Scaffold Ga0326741_001800


Overview

Basic Information
Taxon OID3300034654 Open in IMG/M
Scaffold IDGa0326741_001800 Open in IMG/M
Source Dataset NameSeawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 487_2244
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)4704
Total Scaffold Genes10 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)5 (50.00%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameAtlantic Ocean
CoordinatesLat. (o)13.5136Long. (o)-44.9628Alt. (m)Depth (m)2244
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F002100Metagenome593Y
F002150Metagenome589Y
F008596Metagenome331N

Sequences

Protein IDFamilyRBSSequence
Ga0326741_001800_1493_2311F008596GGAGMSGAWDIATATSLLSGVAKVQINGGNNLTKPTQAVNLVEVVPYTVSSGAYTASQSIALTAYLDSFSVDLLPKRIIVPPVQAGLGTFVNIVVPLLEAYECNTGLQEGATSQFIVSGQCQTAQTVAPLMAMALHYSTTPPNRPEHFYHKPDDESTFTTATSNAGNDFTINDGMWLEDMYVSVFAGTPTVSQSISGYGEFSSNDFGNSLPLKVPMQPGACGLAGTMTPGNLQLASYHNTHMPMKTSCKISTSFTNDITQSGATNFVMGVGYTKQG
Ga0326741_001800_2325_3065F002100AGGAGLSQIPRDSFRPALIKPTFNVGDYGHDVIIPLNCLSGSTVTLVPSTSTFVQVLEDSRVPVDEVNQFITNSDEMAGVHAGDDSDYDTTFEWLPDMSFNAYKASFSLAVFMNVSAYTSGNFAISSVQLTMKVIGGGEGDQVIVNKTINPGMANMTSATSQIAILNVDTKTSAKIPDKPLTIQVKVNTSAGSGTYQCGIVPIFCYFGTAVPKTWTTSSVVVHAHADLAHAFPIFRDEDNMNMLDRSGIGL
Ga0326741_001800_3447_4046F002150N/AMVSVAVPGMIASKTAKKSGQVLQEQFGYNFIDLVTKLALFYVISFLIAKYMEAVIYFQGGLSTIAGFFGIKLVQADQLPSQWISLFVDTDQKTYSATPTAQGEFNPPGWDKPYDYGTPEHQQAEPHLFPQKEQQFRFWDLINAIAIFYISWEAYKYWERGGKDFLTLGIFGLLIAVLSVLSFSRFLNRFSLNRFQEANK
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