NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326741_002591

Scaffold Ga0326741_002591


Overview

Basic Information
Taxon OID3300034654 Open in IMG/M
Scaffold IDGa0326741_002591 Open in IMG/M
Source Dataset NameSeawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 487_2244
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)3907
Total Scaffold Genes11 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)6 (54.55%)
Novel Protein Genes3 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (66.67%)
Associated Families3

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameAtlantic Ocean
CoordinatesLat. (o)13.5136Long. (o)-44.9628Alt. (m)Depth (m)2244
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F000874Metagenome / Metatranscriptome851Y
F014983Metagenome / Metatranscriptome258Y
F097492Metagenome104Y

Sequences

Protein IDFamilyRBSSequence
Ga0326741_002591_2096_2254F014983GGAMENLSTNEKETRRAIRAAVNQANRVRSHCAGCGYTPKPDEWSRVLNYCIDCA
Ga0326741_002591_2763_2963F000874N/AMKILMILGTGAILSFPMDASVIPDCFSQGYSIMEKISVYHGPEEKGKNQGWVLKDSNIQVGGWYCN
Ga0326741_002591_643_837F097492GGAGMFGVHVRIEWGRCPYCESITQMLSTHAGYFRCSTCREITKQYINGHIAYLPVDDSNVLGDEPPV
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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