NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326741_014554

Scaffold Ga0326741_014554


Overview

Basic Information
Taxon OID3300034654 Open in IMG/M
Scaffold IDGa0326741_014554 Open in IMG/M
Source Dataset NameSeawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 487_2244
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1430
Total Scaffold Genes5 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (60.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
Not Available(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameAtlantic Ocean
CoordinatesLat. (o)13.5136Long. (o)-44.9628Alt. (m)Depth (m)2244
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F049037Metagenome / Metatranscriptome147N
F060975Metagenome / Metatranscriptome132N

Sequences

Protein IDFamilyRBSSequence
Ga0326741_014554_30_509F049037N/AMEGSRACPDFKLFYDTGKITHHDRSPNWYIDLPPYTITVRELSERCGFGKETNKLKHWLGLKVFKLIEDPLGFYFLRHLDGAIEDLHEGKSSKRLRYAKAACSQVVLEAKVREGASRTQNHLGRVVQREMGRTITTVRSDEDSSEEKQGKWGKLSELIW
Ga0326741_014554_503_712F060975N/ALVAKHSEKFNKPKTVRDRKKDYYRPDVKREFEEAIEDMGFDEHNKKDAIIAQYQDDLARSQEDGWPYED
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Institute for Fundamental Biomedical Research
Biomedical Sciences Research Center "Alexander Fleming"
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