Basic Information | |
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Taxon OID | 3300034654 Open in IMG/M |
Scaffold ID | Ga0326741_017505 Open in IMG/M |
Source Dataset Name | Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 487_2244 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1284 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 4 (100.00%) |
Novel Protein Genes | 3 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 3 (100.00%) |
Associated Families | 3 |
Taxonomy | |
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All Organisms → cellular organisms → Bacteria | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | Atlantic Ocean | |||||||
Coordinates | Lat. (o) | 13.5136 | Long. (o) | -44.9628 | Alt. (m) | Depth (m) | 2244 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F004908 | Metagenome / Metatranscriptome | 419 | Y |
F011291 | Metagenome / Metatranscriptome | 292 | Y |
F064626 | Metagenome / Metatranscriptome | 128 | N |
Protein ID | Family | RBS | Sequence |
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Ga0326741_017505_291_692 | F004908 | AGG | MERQEHQLTKKIVDLHQVEDGAINPKTGLTEKPSWYVRFEDMSDRVLFKSRLLELLSMGFRKTVENFKAGKATTSVGGEARFWVVVFQDYEVRLQTKTQIMEVVTEGHRHREDDDNARFERRNGNTEEQYTLE |
Ga0326741_017505_37_315 | F064626 | GGA | MKELRKVTEKIKKVLIKAERSGEEFPWIVDQLSLIKMYDVGLPITMVLGLIDEFVEDVEERKRIKALEGFDKEHVQKVYDKVNIKWNDRNIN |
Ga0326741_017505_965_1282 | F011291 | GGA | MDKYEINVWKDAELLTKEVVDFPSNEECYSYVTDKYYAPGTWTGSHQNKAGVTLNRPPMGIRITWSKKGNTHYKPKKLSAEEKKLQRDLYDSITPEVIEELGPNEM |
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