NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326741_021504

Scaffold Ga0326741_021504


Overview

Basic Information
Taxon OID3300034654 Open in IMG/M
Scaffold IDGa0326741_021504 Open in IMG/M
Source Dataset NameSeawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 487_2244
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)1144
Total Scaffold Genes4 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)3 (75.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)2 (100.00%)
Associated Families2

Taxonomy
All Organisms → Viruses → Predicted Viral(Source: DeepVirFinder)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameAtlantic Ocean
CoordinatesLat. (o)13.5136Long. (o)-44.9628Alt. (m)Depth (m)2244
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F013822Metagenome268Y
F052872Metagenome142N

Sequences

Protein IDFamilyRBSSequence
Ga0326741_021504_324_542F013822AGGMTTEKEILRKNVKELQIQLRDAHIRIKELNFTLRELRNRLGNEIEYTTEDGWAMPIENPDAKHIKKGEEDDT
Ga0326741_021504_545_748F052872AGGMNKNYIVAFVSKDKDIILEPLAEFNGDVMYFKSAYDAKTYIEKLYVNSGVDIEPMSDEDGLSIVRVQ

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