Scaffold Ga0326741_075628

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

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Scaffold Ga0326741_075628

Scaffold Ga0326741_075628

Overview

Basic Information
Taxon OID	3300034654 Open in IMG/M
Scaffold ID	Ga0326741_075628 Open in IMG/M
Source Dataset Name	Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 487_2244
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	556
Total Scaffold Genes	2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Novel Protein Genes	2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	2

Taxonomy
All Organisms → Viruses → Duplodnaviria → Heunggongvirae → Uroviricota → Caudoviricetes	(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location Name	Atlantic Ocean
Coordinates	Lat. (^o)	13.5136	Long. (^o)	-44.9628	Alt. (m)		Depth (m)	2244
Location on Map

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Associated Families

Family	Category	Number of Sequences	3D Structure?
F012399	Metagenome	281	Y
F092707	Metagenome	107	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326741_075628_1_357	F012399	N/A	STNGVKPFTIQRRRAILVFKQEEYAGLHIETRLDVDLRTFLDLQELAGSGEAKAADLREAFSMFGDQILENWNLQDEDGTPLSADAVGFLTLPPSLGTAILTAWSDAVTTSGEVLASV
Ga0326741_075628_309_554	F092707	N/A	MERCSDYIGGSLSLGIARWKSVKGGTDRDGRPITKPIELEAAEIVDGLCQRYSCLPSEVMSEDVGILRMLDIVGQNEEKPSG

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