NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters
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Scaffold Ga0326741_079465

Scaffold Ga0326741_079465


Overview

Basic Information
Taxon OID3300034654 Open in IMG/M
Scaffold IDGa0326741_079465 Open in IMG/M
Source Dataset NameSeawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 487_2244
Source Dataset CategoryMetagenome
Source Dataset Use PolicyOpen
Sequencing CenterDOE Joint Genome Institute (JGI)
Sequencing StatusPermanent Draft

Scaffold Components
Scaffold Length (bps)541
Total Scaffold Genes2 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Novel Protein Genes2 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)0 (0.00%)
Associated Families2

Taxonomy
All Organisms → cellular organisms → Bacteria → FCB group → Bacteroidetes/Chlorobi group → Bacteroidetes → Flavobacteriia → Flavobacteriales → unclassified Flavobacteriales → Flavobacteriales bacterium(Source: UniRef50)

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location NameAtlantic Ocean
CoordinatesLat. (o)13.5136Long. (o)-44.9628Alt. (m)Depth (m)2244
Location on Map
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Associated Families

FamilyCategoryNumber of Sequences3D Structure?
F001922Metagenome617Y
F021317Metagenome / Metatranscriptome219Y

Sequences

Protein IDFamilyRBSSequence
Ga0326741_079465_138_539F001922N/AMVLQKLLLEEGVKRGLKASREYSVSVLGYDFIGLISRLAIFFITGFLINAYFQATIQGGIWLNSLAGFFGVKFPDTLPDWTVKLFTTGYHNITFWQIVQIISVLILVMEYMQYDRMLKEKGEKPNATSSAVFLM
Ga0326741_079465_1_138F021317N/AGVTSEQMKGLLQKKQMLELVTNNAEVINIIGKPIIKKLLGLVKNL

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