Basic Information | |
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Taxon OID | 3300034655 Open in IMG/M |
Scaffold ID | Ga0326746_002963 Open in IMG/M |
Source Dataset Name | Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 494_2800 |
Source Dataset Category | Metagenome |
Source Dataset Use Policy | Open |
Sequencing Center | DOE Joint Genome Institute (JGI) |
Sequencing Status | Permanent Draft |
Scaffold Components | |
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Scaffold Length (bps) | 1498 |
Total Scaffold Genes | 4 (view) |
Total Scaffold Genes with Ribosome Binding Sites (RBS) | 1 (25.00%) |
Novel Protein Genes | 1 (view) |
Novel Protein Genes with Ribosome Binding Sites (RBS) | 1 (100.00%) |
Associated Families | 1 |
Taxonomy | |
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All Organisms → Viruses → environmental samples → uncultured virus | (Source: UniRef50) |
Source Dataset Ecosystem |
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Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations |
Source Dataset Sampling Location | ||||||||
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Location Name | Atlantic Ocean | |||||||
Coordinates | Lat. (o) | 14.8216 | Long. (o) | -44.9298 | Alt. (m) | Depth (m) | 2800 | Location on Map |
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Family | Category | Number of Sequences | 3D Structure? |
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F001135 | Metagenome / Metatranscriptome | 767 | Y |
Protein ID | Family | RBS | Sequence |
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Ga0326746_002963_904_1203 | F001135 | AGTAGG | MTTIIYKDKKYKLPFVVKSHSTAMVKRTNRLSGESIDLPGFAACVYDYTMFMSEATEEKDRQTNQMPGFSDNQDDWQIVRNGLNFFRRYFAKEYMVLLD |
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