Scaffold Ga0326746_004442

NMPFamsDB

NMPFamsDB

NMPFamsDB

A database of Novel Metagenome Protein Families

A database of Novel Metagenome Protein Clusters

A database of Novel Metagenome Protein Clusters

x

This website uses cookies to improve user experience. By using NMPFamDB you consent to all cookies in accordance with our privacy policy. OK

Scaffold Ga0326746_004442

Scaffold Ga0326746_004442

Overview

Basic Information
Taxon OID	3300034655 Open in IMG/M
Scaffold ID	Ga0326746_004442 Open in IMG/M
Source Dataset Name	Seawater viral communities from Mid-Atlantic Ridge, Atlantic Ocean - 494_2800
Source Dataset Category	Metagenome
Source Dataset Use Policy	Open
Sequencing Center	DOE Joint Genome Institute (JGI)
Sequencing Status	Permanent Draft

Scaffold Components
Scaffold Length (bps)	1238
Total Scaffold Genes	3 (view)
Total Scaffold Genes with Ribosome Binding Sites (RBS)	1 (33.33%)
Novel Protein Genes	1 (view)
Novel Protein Genes with Ribosome Binding Sites (RBS)	0 (0.00%)
Associated Families	1

Taxonomy
Not Available	(Source: )

Ecosystem & Geography

Source Dataset Ecosystem
Environmental → Aquatic → Marine → Unclassified → Unclassified → Filtered Seawater → Extreme Environments Viral Communities From Various Locations

Source Dataset Sampling Location
Location Name	Atlantic Ocean
Coordinates	Lat. (^o)	14.8216	Long. (^o)	-44.9298	Alt. (m)		Depth (m)	2800
Location on Map

Zoom:	Powered by OpenStreetMap^©

Associated Families

Family	Category	Number of Sequences	3D Structure?
F002415	Metagenome	561	Y

Sequences

Protein ID	Family	RBS	Sequence
Ga0326746_004442_199_816	F002415	N/A	MALVRVTLGGKRLGYVRNNKAGSTTIINYLGQLLWNEKPTWYSGTNVQDHCGKDSYIGREKGFESYHKELKDCEIRIAVYRDPIDKIVAGFYYCQEHVPSLQNLDHFLWGYDHYLKNNYIRVHCRTNTDMLGPDPSIYTHVWNMNEIDTKLLPFLEQLGGGKIQKTRLRGHPPRVITEAQKTKAKEVMAIDYQNGWCKELISSKI

© Pavlopoulos Lab, Bioinformatics & Integrative Biology | B.S.R.C. "Alexander Fleming" | Privacy Notice
Make sure JavaScript is enabled in your browser settings to achieve functionality.